I believe this is the complete rookie list in alphabetical order:

Garrett Atkins
Rocco Baldelli
Clint Barmes
Jason Bay
Jason Bay
Rob Bowen
Eric Bruntlett
Mark Budzinski
Miguel Cabrera
Ron Calloway
Jim Chamblee
Travis Chapman
Bubba Crosby
Bobby Crosby
Enrique Cruz
David DeJesus
Joe DePastino
Matt Diaz
Jeff Duncan
Mike Edwards
Jason Ellison
Lew Ford
Danny Garcia
Jody Gerut
Mike Glavine
Jonny Gomes
Khalil Greene
Tom Gregorio
Robby Hammock
Bo Hart
Michel Hernandez
Mike Hessman
Koyie Hill
J.R. House
Tim Hummell
Gary Johnson
Rontrez Johnson
Reed Johnson
Jason Jones
Matt Kata
David Kelton
Graham Koonce
Pete LaForest
Gerald Laird
Todd Linden
Andy Machado
Dave Matranga
Hideki Matsui
Carlos Mendez
Aaron Miles
Jose Morban
Justin Morneau
Lance Niekro
Ramon Nivar
Laynce Nix
Miguel Ojeda
Ray Olmedo
Jhonny Peralta
Antonio Perez
Colin Porter
Alex Prieto
Humberto Quintero
Robb Quinlan
Prentice Redman
Jose Reyes
Rene Reyes
Carlos Rivera
Cody Ross
Francisco Santos
Dane Sardinha
Stephen Smitherman
Zach Sorensen
Dernell Stenson
Jamal Strong
Mark Teixeira
Luis Terrero
Chase Utley
Carlos Valderrama
Shane Victorino
Matt Watson
Rickie Weeks
Pete Zoccolillo

Pitchers
Name
Jon Adkins
Edwin Almonte
Jason Anderson
Jason Anderson
Luis Ayala
Matt Belisle
Rafael Betancourt
Nate Bland
Jeremy Bonderman
Chris Bootcheck
Nate Bump
Kiko Calero
Chris Capuano
D.J. Carrasco
Juan Cerros
Vinny Chulk
Brandon Claussen
Steve Colyer
Jose Contreras
Roy Corcoran
Chad Cordero
Kevin Correia
Neal Cotts
Roger Deago
Jorge De
Juan Dominguez
Anthony Ferrari
Jesse Foppert
Matt Ford
Mike Gallo
Rosman Garcia
Chad Gaudin
Geoff Geary
Jason Gilfillan
Jimmy Gobble
Edgar Gonzalez
Mike Gonzalez
Andrew Good
John Grabow
Kevin Gregg
Jeremy Griffiths
Josh Hall
Rich Harden
Danny Haren
Bryan Hebson
Aaron Heilman
Edwin Jackson
Greg Jones
Jimmy Journell
Wil Ledezma
Aaron Looper
Aquilino Lopez
Javier Lopez
Noah Lowry
Ryan Madson
Mark Malaska
David Manning
Julio Manon
Luis Martinez
Seth McClung
Chris Mears
Matt Miller
Sergio Mitre
Tony Mounce
Mike Nakamura
Mike Neu
Kevin Ohme
Tommy Phelps
J.J. Putz
Erasmo Ramirez
Horacio Ramirez
Mario Ramos
Stephen Randolph
Scott Randall
Jason Roach
Matt Roney
Rodrigo Rosario
Felix Sanchez
David Sanders
Brian Schmack
Kyle Snyder
Chris Spurling
Jason Stanford
Josh Stewart
Brian Sweeney
Jon Switzer
Billy Traber
Chin-hui Tsao
Joe Valentine
Jose Valverde
Claudio Vargas
Oscar Villarreal
Doug Waechter
Ryan Wagner
Les Walrond
Brandon Webb
Todd Wellemeyer
Matt White
Matt White
Dontrelle Willis
Jerome Williams
Mike Wood
Jason Young